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Meded 534, Autumn 2004
Biology and Informatics

3-D Structural Modelling

Spatial representation of anatomy

3-D label maps

3-D meshes

Other geometric representations

Geometric constraint networks

Determining spatial representations from data

Molecular structure determination

Crystallography

Xing2003 (Wenqing Xu's lab), Beta-Catenin/Axin complex

NMR

Heuristic refinement (PROTEAN)

Reconstruction from serial sections

Marsh2001, Golgi

Region and edge based segmentation

Model and knowledge-based segmentation

Combined methods

Hinshaw2002, Brain

Multi-scale representations

Hierarchical geometric constraint networks

Symbolic representation of anatomy

Foundational Model of Anatomy

Combining spatial and symbolic representation in atlases

Digital anatomist atlases (static)

Digital anatomist dynamic scene generator (3D)

Voxelman

Anatomical Variation

Warping to a template atlas

Volume-based warping

Surface-based warping

Population-based atlases

Characterization of anatomy

Qualitative classification

Quantitative classification

Computational anatomy

Stereology

Functional imaging

Molecular imaging, In situ hybridization

Functional magnetic resonance imaging (fMRI)

Mapping function onto structure

UW Human Brain project, fMRI

Allen Brain Atlas, gene expression

Edinburgh Mouse Atlas, gene expression

 

 

 

 

 

 

 

 

 

 

 

 

 


 

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 Last Updated:
12/01/2004 jfb

Contact the instructor at: brinkley@u.wtngton.edu