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MEBI 534, Autumn 2008
Biology and Informatics

• Digital Anatomist Image Collection Manager
• Online Biology Book

• UW Structural Informatics Group
  Foundational Model Explorer
  OQAFMA query engine for the FMA
  Emily graphical query engine for the FMA
  Digital Anatomist Interactive Atlases
  Image Manager
  Dynamic Scene Generator
• UW HuBio 511, requires password if off campus
• Visible Human
• Workshop Anatomy for the Internet
• Atlas of Human Anatomy in Cross Section
• Gray's Anatomy
• Ontology development 101
• Ontologies and Knowledge Bases

Histology/Cell Structure 

• UW HuBio 512, requires password if off campus
• Internet Atlas of Histology
• Cell Biology Topics
• Web Atlas of Cellular Structures
• National Center for Microscopy and Imaging Research (NCMIR)
• NIH Image

Physiology 

• National Simulation Resource
• Online Clinical Calculator
• PhysioNet
• Dan Cook's functional bioinformatics links

General Bioinformatics Links

• Nucleic Acids Research
  • See right-hand panel for current year database and web server issue
• BioPaX

Pathway Databases

• List of pathway databases
• Roche interactive wall chart
• Biocyc
• Kegg
  

Systems Biology

• Biomodels
• Virtual Cell
• E-Cell
• CellML
• Systems Biology Markup Language
  

Molecular Biology 

• THCME Medical Biochemistry
• Transpath
• DBGET
• Human Gene Nomenclature
• Gene Ontology
• Amigo Gene Ontology Browser
• Locus Link
• Online Mendelian Inheritance in Man (OMIM)
• GeneClinics
• Enzyme Nomenclature Database
• HealthLinks Molecular Biologists Toolkit
• National Center for Biotechnology Information (NCBI)
• SwissProt
• Entrez
• NCBI BLAST
• Ensembl
• NCBI Genomes
• UCSC Human Genome Browser
• Array Informatics Portal

Molecular Cell Biology

• Cell Signaling Networks Database
• UW Cell Systems Project
• Labscape
• NCI Microarray Database (mAdb)

Neuroscience

• The Human Brain Project
• BrainInfo (Neuronames)

• UW Human Brain Project

• CS590RR Introduction to Computational Neuroscience
• Computational neuroscience on the web
• Computational neuroscience summary definition
• Cerebellum.org
• Cortical neuron database
• CoCoMac
• Computational neuroscience research group: NESim
• Neosim
• Topographica.com
• BrainML
• NeuroML

• Synapse Web (Harris)
• Computatonal Neuroanatomy (Ascioli)
• National Center for Microscopy and Imaging Research (Ellisman)
• Neurosys (Jacobs)
• SenseLab (Shepard/Miller)
• Genesis (Bower)
• Neuron (Hines)
• Hodgkin-Huxley simulation

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 Last Updated:
10/21/08

Contact the instructor at: brinkley@u.wtngton.edu