Selected Publications
( Anatomy & Knowledge Representation)
Reviews
Editorials
Books
 

Links to papers are available as pdf or WORD files.

AMIA 1998 Publications

  1.Rosse C, Shapiro LG, Brinkley, JF. The Digital Anatomist Foundational Model: Principles for Defining and Structuring its Concept Domain. J Am Med Inform Assoc. AMIA '98 Symp. Suppl. 1998:820-824.
  2.Mejino JLV, Rosse C. The potential of the Digital Anatomist Foundational Model for Assuring Consistency in UMLS Sources. J Am Med Inform Assoc. AMIA'98 Symp. Suppl. 1998:825-829.
  3.Neal P, Shapiro LG, Rosse C. The Digital Anatomist Structural Abstraction: a Scheme for the Spatial Description of Anatomical Entities. J Am Med Inform Assoc. AMIA'98 Symp. Suppl. 1998:423-427.
 
AMIA 1999 Publications
 
  1.Mejino JLV, Rosse C.Conceptualizations of Anatomical Spatial Entities in the Digital Anatomist Foundational Model. J Am Med Inform Assoc. AMIA'99 Symp. Suppl. 1999:112-116
  2.Agoncillo, A., Mejino JLV, Rosse C.Influence of the Digital Anatomist Foundational Model on Traditional Representations of Anatomical Concepts. J Am Med Inform Assoc. AMIA'99 Symp. Supp. 1999:2-6
  3.Kim S, Brinkley JF, Rosse C. Design features of On-Line Anatomy Information Resources: A Comparison with the Digital Anatomist. J Am Med Inform Assoc. AMIA'99 Symp. Suppl. 1999:560-564
  4.Poliakov A, Hinshaw KP, Rosse C, Brinkley JF. Integration and Visualization of Multimodality Brain Data for Language Mapping. J Am Med Inform Assoc. AMIA'99 Symp. Suppl. 1999:349-353 (HTML version)
  5.Wong BA, Rosse C, Brinkley JF. Semi-automatic Scene Generation using the Digital Anatomist Foundational Model. J Am Med Inform Assoc. AMIA'99 Symp. Suppl. 1999:637-641

AMIA 2001 Publications

  1.Michael J, Mejino JLV, Rosse C. The role of definitions in biomedical concept representation. JAMIA Symposium Supplement. '01:463-467.
  2.Mejino JLV, Noy NF, Musen M, Rosse C. Representation of structural relationships in the Foundational Model of anatomy. JAMIA Symposium Supplement.'01:937p.
  3.Martin RF, Mejino JLV, Bowden DM, Brinkley JF, Rosse C. Foundational model of neuroanatomy: its implications for the Human Brain Project. JAMIA Symposium Supplement. '01:438-442.
  4.Jakobovits R, Brinkley JF, Rosse C, Weinberger E. Enabling clinicians, researchers and educators to build custom web-based biomedical information systems. JAMIA Symposium Supplement. '01:279-283 
  5.Wong J, Kogan S, Cardiff R, Carter J, Tuttle M, Rosse C, De Coronado S. Web-based, micro-terminology development: The MMHCC experience. JAMIA Symposium Supplement.'01:p. 842.

2002 AMIA publications

Mork P, Suciu D, Brinkley JF, Rosse C. 2002. A Declarative Query Interface for Large Semantic Networks. JAMIA Symposium Supplement 2002, p. 1110.

Brinkley JF, Jakobovits R, Rosse C. 2002. An online image management system for anatomy teaching. JAMIA Symposium Supplement 2002, page 983.

2003 AMIA publications

Agoncillo AV, Mejino JLV, Rickard KL, Detwiler LT, Rosse C. (2003) Proposed Classification of Cells in the Foundational Model of Anatomy. In Proceedings, American Medical Informatics Association Fall Symposium, pages 775.

Detwiler LT, Mejino JLV, Rosse C, Brinkley JF. (2003) Efficient Web-Based Navigation of the Foundational Model of Anatomy. In Proceedings, American Medical Informatics Association Fall Symposium, pages 829.

Distelhorst G, Srivastava V, Rosse C, Brinkley JF. (2003) A Prototype Natural Language Interface to a Large Complex Knowledge Base, the Foundational Model of Anatomy. In Proceedings, American Medical Informatics Association Fall Symposium, pages 200-204.

Martin RF, Rickard K, Mejino JLV, Agoncillo AV, Brinkley JF, Rosse C. (2003) The Evolving Neuroanatomical Component of the Foundational Model of Anatomy. In Proceedings, American Medical Informatics Association Fall Symposium, pages 927.

Mejino JLV, Agoncillo AV, Rickard KL, Rosse C. (2003) Representing Complexity in Part-Whole Relationships within the Foundational Model of Anatomy. In Proceedings, American Medical Informatics Association Fall Symposium, pages 450-454.

Travillian RS, Rosse C, Shapiro LG. (2003) An Approach to the Anatomical Correlation of Species through the Foundational Model of Anatomy. In Proceedings, American Medical Informatics Association Fall Symposium, pages 669-673.

MedInfo 2004 publications

Detwiler LT, Chung E, Li A, Mejino JLV, Agoncillo AV, Brinkley JF, Rosse C, Shapiro LG. (2004) A Relation-Centric Query Engine for the Foundational Model of Anatomy. To appear in Proceedings, MedInfo 2004, San Francisco, CA.

Distelhorst GM, Hinshaw KP, Rosse C, Brinkley JF. (2004) An Improved Natural Language Interface to a Complex Anatomical Knowledge Base. To appear in Proceedings, MedInfo 2004, San Francisco, CA.

Fong C, Rosse C, Clark JI, Shapiro LG, Brinkley JF. (2004) An Ontology-based Image Repository for a Biomedical Research Lab. To appear in Proceedings, MedInfo 2004, San Francisco, CA.

Smith B, Rosse C. (2004) The Role of Foundational Relations in the Alignment of Biomedical Ontologies. To appear in Proceedings, MedInfo 2004, San Francisco, CA.

Knowledge Base paper

   Rosse C, Mejino JLV, Modayur BR, Jakobovits R, Hinshaw KP, Brinkley JF. Motivation and Organizational Principles for Anatomical Knowledge Representation: The Digital Anatomist Symbolic Knowledge Base J. Am Med Inform Assoc. 1998;5:17-40.

Protègè Implementation