Publications (old version, last updated 2001Dec20)

[Agoncillo1999] [Abstract] A. V. Agoncillo, J. L. V. Mejino, and C. Rosse, 'Influence of the Digital Anatomist Foundational model on traditional representations of anatomical concepts,' in Proceedings, American Medical Informatics Association Fall Symposium Washington, D.C., pp. 2-6, 1999.

[Altman1993a] R. B. Altman and J. F. Brinkley, 'Probabilistic constraint satisfaction with structural models: application to organ modelling by radial contours,' in 17th Symposium on Computer Applications in Medical Care Washington, D.C., pp. 492-497, 1993.

[Bowden1999] D. M. Bowden, J. E. Robertson, R. F. Martin, M. F. Dubach, J. S. Wu, M. R. McLean, and J. F. Brinkley, 'Web-tools for neuroscience based on NeuroNames, a template brain atlas, edgewarp and geographic information systems software,' in Fifth international confernce on functional mapping of the human brain Heinrich-Heine University, Dusseldorf, Germany, 1999.

[Bradley1995] S. W. Bradley, C. Rosse, and J. F. Brinkley, 'Web-based access to an online atlas of anatomy: the Digital Anatomist Common Gateway Interface,' in 19th Symposium on Computer Applications in Medical Care New Orleans, pp. 512-516, 1995.

[Brinkley1988a] J. F. Brinkley, 'Representing biologic objects as geometric constraint networks,' in Proceedings, AAAI Spring Symposium Series: Artificial Intelligence in Medicine Stanford University, pp. 7-8, 1988.

[Brinkley1991] J. F. Brinkley, 'Structural informatics and its applications in medicine and biology,' Academic Medicine, vol. 66, pp. 589-591, 1991.

[Brinkley1992] J. F. Brinkley, 'Hierarchical geometric constraint networks as a representation for spatial structural knowledge,' in Proceedings, 16th Annual Symposium on Computer Applications in Medical Care pp. 140-144, 1992.

[Brinkley1993a] J. F. Brinkley, 'A flexible, generic model for anatomic shape: application to interactive two-dimensional medical image segmentation and matching,' Computers and Biomedical Research, vol. 26, pp. 121-142, 1993.

[Brinkley1993b] J. F. Brinkley, 'The potential for three-dimensional ultrasound,' in Ultrasound in Obstetrics and Gynecology F. A. Chervenak, G. C. Isaacson, and S. Campbell, Eds. Boston, Little, Brown and Company, 1993.

[Brinkley1994] J. F. Brinkley, 'A distributed, object-oriented framework for medical image management and analysis: application to evaluation of medical image segmentation techniques,' in Proceedings, IEEE Workshop on Biomedical Image Analysis Seattle, IEEE Computer Society Press, pp. 194-203, 1994.

[Brinkley1994a] J. F. Brinkley, 'Educational systems:synopsis,' in Yearbook of Medical Informatics J. H. Van Bemmel and A. T. McCray, Eds. The Netherlands, American Medical Informatics Association, pp. 465-467, 1994.

[Brinkley1994b] J. F. Brinkley, 'The Digital Anatomist Project,' in Proceedings, Annual Meeting San Francisco, pp. 6, 1994.

[Brinkley1998b] J. F. Brinkley, 'The use of anatomical knowledge in medical imaging: an overview of the University of Washington Structural Informatics Group,' in Advances in Biomedical Image Databases S. Wong, Ed. Boston, Kluwer Academic Press, pp. 89-116, 1998.

[Brinkley1999] J. F. Brinkley, 'University of Washington Human Brain Project, Home Page,' 1999

[Brinkley2000a] J. F. Brinkley, 'Structure-based Visual Access to Biomedical Information: On-line information,' vol. 2000, 2000

[Brinkley2000] J. F. Brinkley, 'University of Washington Structural Informatics Group, Home Page,' 2000

[Brinkley2000] J. F. Brinkley, 'University of Washington Digital Anatomist Project, Home Page,' 2000

[Brinkley2000] [Abstract] J. F. Brinkley, E. M. Albright, S. Kim, J. L. V. Mejino, L. G. Shapiro, and C. Rosse, 'Visible Human, Construct Thyself: The Digital Anatomist Dynamic Scene Generator,' in Visible Human Project Conference 2000 Bethesda, Maryland, National Library of Medicine, 2000. Submitted.

[Brinkley1988] J. F. Brinkley, R. B. Altman, B. S. Duncan, B. G. Buchanan, and O. Jardetzky, 'Heuristic refinement method for the derivation of protein solution structures: validation on cytochrome b562,' J. Chem. Inf. Comput. Sci., vol. 28, pp. 194-210, 1988.

[Brinkley1997b] J. F. Brinkley, S. W. Bradley, J. W. Sundsten, and C. Rosse, 'The Digital Anatomist information system and its use in the generation and delivery of Web-based anatomy atlases,' Computers and Biomedical Research, vol. 30, pp. 472-503, 1997.

[Brinkley1993] J. F. Brinkley, K. Eno, and J. W. Sundsten, 'Knowledge-based client-server approach to structural information retrieval: the Digital Anatomist Browser,' Computer Methods and Programs in Biomedicine, vol. 40, pp. 131-145, 1993.

[Brinkley1995] J. F. Brinkley, K. R. Eno, J. W. Sundsten, D. M. Conley, and C. Rosse, 'A Distributed Framework for Distance Learning in Anatomy: The Digital Anatomist Interactive Atlas,' in 19th Symposium on Computer Applications in Medical Care pp. 972, 1995.

[Brinkley2000] J. F. Brinkley and R. M. Jakobovits, 'UW Brain Project Language Map Experiment Management System,' vol. 2001, 2001

[Brinkley2002] J.F. Brinkley, C. Rosse, 'Imaging Informatics and the Human Brain Project: the Role of Structure, Review' Yearbook of Medical Informatics, pp.111-128, 2002

[Brinkley1997] J. F. Brinkley, L. M. Myers, J. S. Prothero, G. H. Heil, J. S. Tsuruda, K. R. Maravilla, G. A. Ojemann, and C. Rosse, 'A structural information framework for brain mapping,' in Neuroinformatics: An Overview of the Human Brain Project S. H. Koslow and M. F. Huerta, Eds. Mahwah, New Jersey, Lawrence Erlbaum, pp. 309-334, 1997.

[Brinkley1997c] J. F. Brinkley and J. S. Prothero, 'Slisp: A flexible software toolkit for hybrid, embedded and distributed applications,' Software -- Practice and Experience, vol. 27, pp. 33-48, 1997.

[Brinkley1989] J. F. Brinkley, J. S. Prothero, J. W. Prothero, and C. Rosse, 'A framework for the design of knowledge-based systems in structural biology,' in Proceedings, 15th Annual Symposium on Computer Applications in Medical Care Baltimore, Maryland, pp. 61-65, 1989.

[Brinkley1997a] J. F. Brinkley and C. Rosse, 'The Digital Anatomist distributed framework and its applications to knowledge based medical imaging,' Journal of the American Medical Informatics Association, vol. 4, pp. 165-183, 1997. Also published in van Bemmel, J.H. and McCray, A.T. (eds.) Yearbook of Medical Informatics 98, pp 119-137, 1998.

[Brinkley1998a] [Abstract] J. F. Brinkley and C. Rosse, 'Requirements for an on-line knowledge-based anatomy information system,' in Proceedings, American Medical Informatics Association Fall Symposium Orlando, Florida, pp. 892-896, 1998.

[Brinkley1999] [Abstract] J. F. Brinkley, B. A. Wong, K. P. Hinshaw, and C. Rosse, 'Design of an anatomy information system,' Computer Graphics and Applications, vol. 19, pp. 38-48, 1999. Invited paper.

[Conley1994] D. Conley and C. Rosse, 'Interactive Atlas of Thoracic Viscera,' University of Washington 1994.

[Conley1994a] D. Conley and C. Rosse, 'Animations of thoracic viscera,' University of Washington 1994.

[Conley1993] D. M. Conley, J. F. Brinkley, W. Rauschning, and C. Rosse, 'A multimedia approach to the study of the mediastinum utilizing a computer-generated three-dimensional model,' in Proceedings, Annual Meeting San Diego, 1993.

[Conley1992] D. M. Conley, K. G. Kastella, J. W. Sundsten, W. Rauschnig, and C. Rosse, 'Computer-generated three-dimensional reconstruction of the mediastinum correlated with sectional and radiological anatomy,' Clinical Anatomy, vol. 5, pp. 185-202, 1992.

[Conley1995] D. M. Conley, J. W. Sundsten, P. Ratiu, W. Rauschning, and C. Rosse, 'The Digital Anatomist series: 3-D, segmented, dynamic atlases of body regions,' in Proceedings, 19th Symposium on Computer Applications in Medical Care New Orleans, pp. 1016, 1995.

[Corina1999] D. P. Corina, S. L. McBurney, C. Dodrill, K. Hinshaw, J. Brinkley, and G. Ojemann, 'Functional roles of Broca's Area and SMG: Evidence from cortical stimulation mapping in a deaf signer,' Neuroimage, vol. 10, pp. 570-581, 1999. In Press.

[Corina1998] D. P. Corina, S. L. McBurney, K. Hinshaw, J. Brinkley, E. Lettich, and G. A. Ojemann, 'Left hemisphere specialization for American Sign Language: a cortical stimulation study,' in Abstracts, Society for Neuroscience Annual Meeting pp. 15.4, 1998.

[Corina2000] D. P. Corina, A. V. Poliakov, K. Steury, R. F. Martin, J. F. Brinkley, K. A. Mulligan, and G. A. Ojemann, 'Correspondences between language cortex identified by cortical stimulation mapping and fMRI,' Neuroimage (Human Brain Mapping Annual Meeting, June 12-16), vol. 11, pp. S295, 2000.

[Corina2001] D. P. Corina, K. Steury, A. V. Poliakov, R. F. Martin, K. A. Mulligan, K. Maravilla, E. Lettich, J. F. Brinkley, K. Inuoe, and G. Ojemann, 'A comparison of language function derived from cortical stimulation mapping and fMRI: data from object naming,' Journal article, submitted, 2001.

[Corina1999] D. P. Corina, K. R. Steury, K. A. Mulligan, K. P. Hinshaw, A. P. Poliakov, J. F. Brinkley, K. R. Maravilla, and G. A. Ojemann, 'A comparison of language cortex indentified by cortical stimulation mapping and fMRI techniques,' in Abstracts, Society for Neuroscience Annual Meeting Miami, pp. 654.2, 1999.

[Dailey1996] D. J. Dailey and J. F. Brinkley, 'A metric for quantifying response time in a browser application,' IEEE Trans. Systems, Man and Cybernetics, Part A (Systems and Humans), vol. 26, pp. 271-275, 1996.

[Dailey1994] D. J. Dailey, K. Eno, and J. F. Brinkley, 'Performance evaluation of a distance learning program,' in Proceedings, 18th Annual Symposium on Computer Applications in Medical Care Washington, D.C., pp. 76-80, 1994.

[Dailey1993a] D. J. Dailey, K. E. Eno, G. L. Zick, and J. F. Brinkley, 'A network model for wide area access to structural information,' in 17th Symposium on Computer Applications in Medical Care pp. 497-501, 1993.

[DeVito1986] J. L. DeVito, J. Graham, G. Schultz, J. W. Sundsten, and J. W. Prothero, 'Morphometry of the developing brain in macaca nemestrina,' in Ontogeny, Cognition and Social Behaviour of Primates J. G. Else and P. Lee, Eds. Cambridge, Cambridge University Press, pp. 131-139, 1986.

[Eno1991] K. Eno, J. W. Sundsten, and J. F. Brinkley, 'A multimedia anatomy browser incorporating a knowledge base and 3-D images,' in Symposium on Computer Applications in Medical Care pp. 727-731, 1991.

[Graney1995] D. Graney, D. Conley, J. W. Sundsten, P. Ratiu, W. Rauschning, J. F. Brinkley, and C. Rosse, 'Digital Anatomist interactive atlases,' Journal of Clinical Anatomy, vol. 17, pp. 213, 1995. Abstracts of 3rd European Congress of the European Association of Clinical Anatomy.

[Greenes1990a] R. G. Greenes and J. F. Brinkley, 'Radiology Applications,' in Medical Informatics: Computer Applications in Health Care E. H. Shortliffe, L. E. Perreault, G. Wiederhold, and L. M. Fagan, Eds. Menlo Park, California, Addison Wesley, pp. 324-365, 1990.

[Hahn1999] J. S. Hahn, E. Burnside, J. F. Brinkley, C. Rosse, and M. A. Musen, 'Representing the Digital Anatomist Foundational Model as a Protege ontology,' in Proceedings, American Medical Informatics Association Fall Symposium Washington, D.C., pp. 1070, 1999.

[Hinshaw1995] [Abstract] K. P. Hinshaw, R. B. Altman, and J. F. Brinkley, 'Shape-based models for interactive segmentation of medical images,' in SPIE Medical Imaging 1995: Image Processing San Diego, pp. 771-780, 1995.

[Hinshaw1996] [Abstract] K. P. Hinshaw and J. F. Brinkley, 'Shape-based interactive three-dimensional medical image segmentation,' in SPIE Medical Imaging: Image Processing, Volume 3034 K. M. Hanson, Ed. Newport Beach, CA, pp. 236-242, 1996.

[Hinshaw1997] [Abstract] K. P. Hinshaw and J. F. Brinkley, 'Using 3-D shape models to guide segmentation of MR brain images,' in Proceedings, American Medical Informatics Association Fall Symposium Nashville, Tennessee, American Medical Informatics Association, pp. 469-473, 1997. Awarded second place, student paper competition.

[Hinshaw1998] [Abstract] K. P. Hinshaw and J. F. Brinkley, 'Incorporating constraint-based shape models into an interactive system for functional brain mapping,' in Proceedings, American Medical Informatics Association Fall Symposium Orlando, Florida, American Medical Informatics Association, pp. 921-925, 1998.

[Hinshaw2002] [Abstract] K. P. Hinshaw, A. V. Poliakov, R. F. Martin, E. B. Moore, L. G. Shapiro, and J. F. Brinkley, 'Shape-based cortical surface segmentation for visualization brain mapping,' Neuroimage, 2002.

[Jakobovits2000] R. Jakobovits, 'WIRM: A perl-based application server,' Web Techniques, pp. 97-100, 2000.

[Jakobovits2000] R. Jakobovits, S. Soderland, R. K. Taira, and J. F. Brinkley, 'Requirements of a web-based experiment management system,' in Proceediings, AMIA Symposium 2000 Los Angeles, pp. 374-378, 2000.

[Jakobovits2000] R. Jakobovits, S. G. Soderland, R. K. Tiara, and J. F. Brinkley, 'The web-interfacing repository manager: a framework for developing web-based multimedia applications for medical research,' in Proceedings, International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences Las Vegas, June 26-29, pp. 527-533, 2000.

[Jakobovits1997] R. M. Jakobovits and J. F. Brinkley, 'Managing medical research data with a Web-interfacing repository manager,' in Proceedings, American Medical Informatics Association Fall Symposium Nashville, pp. 454-458, 1997.

[Jakobovits1998] R. M. Jakobovits and J. F. Brinkley, 'Query-by-context: a framework for modelling and navigating multimedia research data,' in Proceedings, American Medical Informatics Association Fall Symposium Orlando, Florida, pp. 1021, 1998.

[Jakobovits2002] R. M. Jakobovits and J. F. Brinkley, 'WIRM: An application server for biomedical content management,' Journal article, in preparation, 2002.

[Jakobovits2001] [Abstract] R. M. Jakobovits, J. F. Brinkley, C. Rosse, and E. Weinberger, 'Enabling clinicians, researchers, and educators to build custom web-based biomedical information systems,' in Proc AMIA Annual Fall Symposium pp. 279-283, 2001.

[Jakobovits1996] R. M. Jakobovits, B. Modayur, and J. F. Brinkley, 'A Web-based repository manager for brain mapping data,' in Proceedings, AMIA Fall Symposium Washington, D.C., pp. 309-313, 1996.

[Jakobovits1996a] R. M. Jakobovits, O. M. Others, and J. F. Brinkley, 'A Visual Database Environment For Scientific Research,' Journal of Visual Languages and Computing, 1997. In Press.

[Kalet1999] I. J. Kalet, J. Wu, M. Lease, M. M. Austin-Seymour, J. F. Brinkley, and C. Rosse, 'Anatomical information in radiation treatment planning,' in Proceedings, American Medical Informatics Association Fall Symposium Washington, D.C., pp. 291-295, 1999.

[Kim1999] [Abstract] S. Kim, J. F. Brinkley, and C. Rosse, 'Design features of on-line anatomy information resources: a comparison with the Digital Anatomist,' in Proceedings, American Medical Informatics Association Fall Symposium Washington, D.C., pp. 560-564, 1999.

[Kim2000] S. Kim, J. F. Brinkley, and C. Rosse, 'Review of on-line anatomy information resources: implications for the design of the Digital Anatomist,' 2000. Submitted.

[Kinbar2002] K. Kinbar, J. Hill, R. F. Martin, K. Mulligan, A. V. Poliakov, J. F. Brinkley, E. Lettich, G. A. Ojemann, and D. P. Corina, 'Naming deficits during cortical stimulation mapping: functional specificity reconsidered,' Journal article, in preparation, 2002.

[Kinbar2001] K. Kinbar, R. Martin, J. Hill, K. Mulligan, A. Poliakov, J. F. Brinkley, G. A. Ojemann, and D. P. Corina, 'Naming deficits during cortical stimulation mapping: functional specificity reconsidered,' in Proceedings, 8th Annual Meeting, Cognitive Neuroscience Society (CMS) New York, March 25-27, pp. 126, 2001.

[Lober1999] W. B. Lober and J. F. Brinkley, 'A portable image annotation tool for web-based anatomy atlases,' in Proceedings, American Medical Informatics Association Fall Symposium Washington, D.C., pp. 1108, 1999.

[Lober2000] W. B. Lober and J. F. Brinkley, 'A personal annotated image server,' in JAMIA Supplement, Fall 2000 Annual Symposium Los Angeles, 2000. Submitted.

[W. B. Lober and J. F. Brinkley, 'XML-based image annotation: PAIS - a personal annotated image server,' presented at Slice of Life 2000, 2000.

[Lober2001] W. B. Lober, L. J. Trigg, D. Bliss, and J. F. Brinkley, 'IML: An image markup language,' in Proc. AMIA Annual Symposium Washington, DC, pp. 403-407, 2001.

[Martin2001] R. F. Martin, J. L. V. Mejino, D. M. Bowden, J. F. Brinkley, K. Mulligan, and C. Rosse, 'A next generation knowledge source: foundational model of neuroanatomy,' in Society for Neuroscience Annual Meeting San Diego, pp. 23.48, 2001.

[Martin2001] [Abstract] R. F. Martin, J. L. V. Mejino, D. M. Bowden, J. F. Brinkley, and C. Rosse, 'Foundational model of neuroanatomy: implications for the Human Brain Project,' in Proc AMIA Annu Fall Symp Washington, DC, pp. 438-442, 2001.

[Martin2000] R. F. Martin, A. V. Poliakov, K. A. Mulligan, D. P. Corina, G. A. Ojemann, and J. F. Brinkley, 'Multi-patient mapping of language sites on 3-D brain models,' Neuroimage (Human Brain Mapping Annual Meeting, June 12-16), vol. 11, pp. S534, 2000.

[Martin2000] R. F. Martin, A. V. Poliakov, K. A. Mulligan, K. Kinbar, D. P. Corina, K. Maravilla, E. Lettich, G. A. Ojemann, and J. F. Brinkley, 'Multi-patient mapping of language sites on 3-D brain models,' in Abstracts, 30th Annual Meeting, Society for Neuroscience New Orleans, Nov 4-9, pp. 464.20, 2000.

[Mejino1999] [Abstract] J. L. Mejino and C. Rosse, 'Conceptualization of anatomical spatial entities in the Digital Anatomist Foundational Model,' in Proceedings, American Medical Informatics Association Fall Symposium Washington, D.C., pp. 112-116, 1999.

[Mejino2001] [Abstract] J. L. V. Mejino, N. F. Noy, M. A. Musen, J. F. Brinkley, and C. Rosse, 'Representation of structural relationships in the foundational model of anatomy,' in Proceedings, AMIA Fall Symposium Washington, DC, pp. 973, 2001.

[Mejino1998] [Abstract] J. L. V. Mejino and C. Rosse, 'The potential of the Digital Anatomist foundational model for assuring consistency in UMLS sources,' in Proceedings, American Medical Informatics Association Fall Symposium Orlando, Florida, pp. 825-829, 1998.

[Modayur1997b] B. Modayur, R. Jakobovits, K. Maravilla, G. Ojemann, and J. F. Brinkley, 'Evaluation of a visualization-based approach to functional brain mapping,' in Proceedings, American Medical Informatics Association Fall Symposium Nashville, pp. 429-433, 1997.

[Modayur1997a] B. Modayur, G. Ojemann, E. Lettich, R. Jakobovits, J. Sundsten, and J. F. Brinkley, 'Information system for mapping and studying cortical language organization,' in Abstracts, Society for Neuroscience Annual Meeting New Orleans, pp. 2228, 1997.

[Modayur1997] [Abstract] B. Modayur, J. Prothero, G. Ojemann, K. Maravilla, and J. F. Brinkley, 'Visualization-based mapping of language function in the brain,' Neuroimage, vol. 6, pp. 245-258, 1997.

[Modayur1996] B. R. Modayur, J. Prothero, C. Rosse, R. Jakobovits, and J. F. Brinkley, 'Visualization and mapping of neurosurgical functional data onto a 3-D MR-based model of the brain surface,' in Proceedings, 1996 AMIA Fall Symposium Washington, D.C., pp. 304-308, 1996.

[Myers1995] L. M. Myers and J. F. Brinkley, 'Visualization of brain surface features using registered partially segmented MRI scans,' in SPIE Medical Imaging: Image Display San Diego, CA, pp. 43-52, 1995.

[Myers1995a] L. M. Myers, J. S. Prothero, and J. F. Brinkley, 'Volume rendering of multi-spectral MR data for brain language site mapping,' in Proceedings, Advanced Visual Systems User Conference Boston, pp. 471-480, 1995.

[Neal1998] [Abstract] P. J. Neal, L. G. Shapiro, and C. Rosse, 'The Digital Anatomist spatial abstraction: a scheme for the spatial description of anatomical features,' in Proceedings, American Medical Informatics Association Fall Symposium Orlando, Florida, pp. 423-427, 1998.

[Poliakov2001] A. V. Poliakov, E. Albright, D. Corina, G. Ojemann, R. F. Martin, and J. F. Brinkley, 'Server-based approach to web visualization of integrated 3-D medical image data,' in Proc. AMIA Fall Symposium pp. 533-537, 2001. http://quad.biostr.washington.edu/~andrew/cgi-bin/Brain_Browser.cgi?patient=P54.

[Poliakov2001] A. V. Poliakov, E. Albright, D. P. Corina, G. A. Ojemann, R. F. Martin, and J. F. Brinkley, 'Server-based approach to web visualization of integrated 3-D brain mapping data,' in Thirty-first Annual Meeting, Society for Neuroscience San Diego, pp. 529.1, 2001.

[Poliakov2002] A. V. Poliakov, E. Albright, D. P. Corina, G. A. Ojemann, R. F. Martin, and J. F. Brinkley, 'Server-based approach to web visualization of integrated 3-D medical image data,' Journal article, in preparation, 2002.

[Poliakov1999a] [Abstract] A. V. Poliakov, K. P. Hinshaw, D. P. Corina, K. R. Steury, K. R. Maravilla, G. A. Ojemann, K. A. Mulligan, and J. F. Brinkley, 'Integration and visualization of multimodality brain data for language mapping,' in Abstracts, Society for Neuroscience Annual Meeting Miami, pp. 654.1, 1999. In Press.

[Poliakov2000] A. V. Poliakov, R. M. Jakobovits, R. F. Martin, D. P. Corina, and J. F. Brinkley, 'Software tools for visualization and analysis of human brain data for language mapping,' Neuroimage (Human Brain Mapping Annual Meeting, June 12-16), vol. 11, pp. S907, 2000.

[Prothero1982] J. S. Prothero and J. W. Prothero, 'Three-dimensional reconstruction from serial sections: I. A portable microcomputer-based software package in Fortran.,' Computers and Biomedical Research, vol. 15, pp. 598-604, 1982.

[Prothero1986] J. S. Prothero and J. W. Prothero, 'Three-dimensional reconstruction from serial sections IV. The reassembly problem,' Computers and Biomedical Research, vol. 19, pp. 3610373, 1986.

[Prothero1989] J. S. Prothero and J. W. Prothero, 'A software package in C for interactive 3D reconstruction and display of anatomical objects from serial section data,' in NCGA Proceedings pp. 187-192, 1989.

[Prothero1985] J. S. Prothero, M. Riggins, A. Lindsay, R. Harris, and J. W. Prothero, 'Three-dimensional reconstruction from serial sections III. Autoscan, a software package in Fortran for semiautomated photomicrography,' Computers and Biomedical Research, vol. 18, pp. 132-136, 1985.

[Ratiu1994] P. Ratiu and C. Rosse, 'Animations of knee anatomy,' University of Washington 1994.

[Rosse1995] C. Rosse, 'The potential of computerized representations of anatomy in the training of health care providers,' Academic Medicine, vol. 70, pp. 499-505, 1995.

[Rosse1997] C. Rosse, 'Study Guide for Gross Anatomy and Embryology,' Department of Biological Structure, University of Washington 1997.

[Rosse1999] C. Rosse, 'Use of computer materials in current anatomy courses,' 1999Based on discussions at the 1999 Annual Meeting of the American Association of Anatomists, and the 1999 Annual Meeting of the American Association of Clinical Anatomists.

[Rosse1999a] C. Rosse, 'Anatomy atlases,' Clinical Anatomy, vol. 12, pp. 293-299, 1999.

[Rosse2000b] [Abstract] C. Rosse, 'Terminologia Anatomica; considered from the perspective of next-generation knowledge sources,' Clinical Anatomy, vol. 14, pp. 120-133, 2000. In Press.

[Rosse1995a] C. Rosse, M. Ben Said, K. R. Eno, and J. F. Brinkley, 'Enhancements of Anatomical Information in UMLS Knowledge Sources,' in Proceedings, 19th Annual Symposium on Computer Applications in Medical Care New Orleans, pp. 873-877, 1995.

[Rosse1990] C. Rosse, J. F. Brinkley, and J. Prothero, 'Structural informatics: the representation of anatomical knowledge in computer readable form,' in Proceedings, First Annual Educational and Research Conference J. A. Mitchell, Ed. Snowbird, Utah, pp. 37-38, 1990.

[Rosse1997] [Abstract] C. Rosse, J. L. Mejino, B. R. Modayur, R. M. Jakobovits, K. P. Hinshaw, and J. F. Brinkley, 'Motivation and organizational principles for anatomical knowledge representation: the Digital Anatomist symbolic knowledge base,' Journal of the American Medical Informatics Association, vol. 5, pp. 17-40, 1998.

[Rosse2000] [Abstract] C. Rosse, J. L. Mejino, L. G. Shapiro, and J. F. Brinkley, 'Visible Human, Know Thyself: The Digital Anatomist Structural Abstraction,' in Visible Human Project Conference 2000 Bethesda, Maryland, National Library of Medicine, 2000. Submitted.

[Rosse1998] [Abstract] C. Rosse, L. G. Shapiro, and J. F. Brinkley, 'The Digital Anatomist foundational model: principles for defining and structuring its concept domain,' in Proceedings, American Medical Informatics Association Fall Symposium Orlando, Florida, pp. 820-824, 1998.

[Rosse2000a] C. Rosse, C. Solomon, D. Schaad, and S. Kim, 'A validation study of a spatial reasoning test in anatomy,' 2000. In Preparation.

[Rosse2001] C. Rosse and M. S. Tuttle, 'Explaining the brain to a computer,' in Human Brain Project Annual Meeting 2001.

[Shapiro1994] L. G. Shapiro, S. L. Tanimoto, J. F. Brinkley, J. P. Ahrens, R. M. Jakobovits, and L. M. Lewis, 'A visual database system for data and experiment management in model-based computer vision,' in Proceedings of the Second CAD-Based Vision Workshop pp. 64-72, 1994.

[Stalder1999] D. S. Stalder and J. F. Brinkley, 'The Digital Anatomist Foundational Model server,' in Perl Conference 3.0 Monterey, California, 1999.

[Stimac1988] G. K. Stimac, J. W. Sundsten, J. S. Prothero, J. W. Prothero, R. Gerlach, and R. Sorbonne, 'Three-dimensional contour surfacing of the skull, face, and brain from CT and MR images and from anatomic sections,' AJR, vol. 151, pp. 807-810, 1988.

[Sundsten1994] J. W. Sundsten, 'Interactive Atlas of the Brain,' 1994.

[Sundsten1993] J. W. Sundsten, J. F. Brinkley, and K. Eno, 'Digital Anatomist Browser: Teaching neuroanatomy with the use of digital and video-disc images accessed by computer,' in Proceedings, Annual Meeting of American Association of Anatomists San Diego, 1993.

[Sundsten1991a] J. W. Sundsten, J. F. Brinkley, K. Eno, R. M. Harris, and K. G. Kastella, 'Interactive use of videodisc animations of computer-reconstructed human brain,' in Abstracts, Annual Meeting, Society for Neuroscience New Orleans, 1991.

[Sundsten2000] J. W. Sundsten, D. M. Conley, P. Ratiu, K. A. Mulligan, and C. Rosse, 'Digital Anatomist web-based interactive atlases,' 2000

[Sundsten1992] J. W. Sundsten and K. G. Kastella, 'Human Brain Animations,' University of Washington 1992.

[Sundsten1991] J. W. Sundsten, K. G. Kastella, and D. M. Conley, 'Videodisc animation of 3D computer reconstructions of the human brain,' JBC, vol. 18, pp. 45-49, 1991.

[Sundsten1983] J. W. Sundsten and J. W. Prothero, 'Three-dimensional reconstruction from serial sections: II. A microcomputer-based facilty for rapid data collection,' The Anatomical Record, vol. 207, pp. 665-671, 1983.

[Wong1998] B. A. Wong and J. F. Brinkley, 'Dynamic 3-D scene navigation in web-based anatomy atlases,' in Proceedings, American Medical Informatics Association Fall Symposium Orlando, Florida, pp. 1100, 1998.

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Last updated 12.20.2001 by cafb