HOME	MEDED 534 , Autumn 2004 Biology and Informatics
	Week 5, Class 2: Pathway databases Assignment 1. Read the following articles Schaefer 2004, Pathway databases (review) Karp 2001, Pathway databases: a case study in computational symbolic theories Krieger 2004, MetaCyc Kenehisa 2004, KEGG 2. Topics for class discussion Sophia Jeng will give a presentation on these and other databases in class. Discuss the issues raised by these papers, look at biopax.org as an attempt to integrate these databases Lookup in Metacyc or KEGG the glycolysis pathway in Figure 8-4 of Lodish. Explore the resources available about this pathway. What is present? What would you like to see? Concentrate on metabolic pathways in this class. We will discuss signalling pathways in a later class.
BACK TO TOP  Last Updated: 10/22/2004	Contact the instructor at: brinkley@u.washington.edu