HOME	MEBI 534 , Autumn 2007 Biology and Informatics
	Expression Informatics Student presentation  Microarray analysis Microarray databases and standards Microarrays Animation showing the basic idea behind a microarray experiment http://www.bio.davidson.edu/courses/genomics/chip/chip.html Slides on array analysis MGED http://www.mged.org/ MIAME MGED ontology OWL file from MGED site Protege MAGE-ML, and MAGE-TAB List of software and analysis tools http://ihome.cuhk.edu.hk/~b400559/arraysoft.html Example Array analysis and database suite http://www.tm4.org/ all have PPT tutorials Spotfinder, for image analysis MIDAS for normalization MEV for viewing of multiple experiments MADAM, local LIMS Array repositories Stanford Microarray Database http://genome-www5.stanford.edu/ Gene Expression Omnibus (NCBI) http://www.ncbi.nlm.nih.gov/geo/ ArrayExpress http://www.ebi.ac.uk/microarray-as/aer/?#ae-main[0] Local (UW) expertise Roger Bumgarner lab http://www.expression.washington.edu/bumgarnerlab/index.php Displaying expression array data TissueInfo – linking to anatomy http://icb.med.cornell.edu/services/tissueinfo/query Warren brain animation In situ hybridization Gene expression atlases Allen brain atlas http://www.brain-map.org/welcome.do EMAGE  http://genex.hgu.mrc.ac.uk/Emage/database/emageIntro.html Other methods for measuring gene expression Polymerase Chain Reaction Proteomics More....